Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia
Identifieur interne : 000491 ( Main/Exploration ); précédent : 000490; suivant : 000492Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia
Auteurs : Damien Mornico ; Lucie Miché ; Gilles Béna [Maroc] ; Nico Nouwen ; André Verméglio ; David Vallenet ; Alexander A. T. Smith ; Eric Giraud ; Claudine Médigue ; Lionel MoulinSource :
- Genes [ 2073-4425 ] ; 2011.
Abstract
Tropical aquatic species of the legume genus
Url:
DOI: 10.3390/genes3010035
PubMed: 24704842
PubMed Central: 3899966
Affiliations:
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Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia</title>
<author><name sortKey="Mornico, Damien" sort="Mornico, Damien" uniqKey="Mornico D" first="Damien" last="Mornico">Damien Mornico</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="af2-genes-03-00035">LABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France; E-Mails:<email>vallenet@genoscope.cns.fr</email>
(D.V.);<email>asmith@genoscope.cns.fr</email>
(A.A.T.S.);<email>cmedigue@genoscope.cns.fr</email>
(C.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Miche, Lucie" sort="Miche, Lucie" uniqKey="Miche L" first="Lucie" last="Miché">Lucie Miché</name>
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(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
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(N.N.);<email>eric.giraud@ird.fr</email>
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<author><name sortKey="Bena, Gilles" sort="Bena, Gilles" uniqKey="Bena G" first="Gilles" last="Béna">Gilles Béna</name>
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(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
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<author><name sortKey="Vermeglio, Andre" sort="Vermeglio, Andre" uniqKey="Vermeglio A" first="André" last="Verméglio">André Verméglio</name>
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</nlm:aff>
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<author><name sortKey="Vallenet, David" sort="Vallenet, David" uniqKey="Vallenet D" first="David" last="Vallenet">David Vallenet</name>
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<author><name sortKey="Smith, Alexander A T" sort="Smith, Alexander A T" uniqKey="Smith A" first="Alexander A. T." last="Smith">Alexander A. T. Smith</name>
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<author><name sortKey="Giraud, Eric" sort="Giraud, Eric" uniqKey="Giraud E" first="Eric" last="Giraud">Eric Giraud</name>
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<author><name sortKey="Medigue, Claudine" sort="Medigue, Claudine" uniqKey="Medigue C" first="Claudine" last="Médigue">Claudine Médigue</name>
<affiliation><nlm:aff id="af2-genes-03-00035">LABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France; E-Mails:<email>vallenet@genoscope.cns.fr</email>
(D.V.);<email>asmith@genoscope.cns.fr</email>
(A.A.T.S.);<email>cmedigue@genoscope.cns.fr</email>
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</affiliation>
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<author><name sortKey="Moulin, Lionel" sort="Moulin, Lionel" uniqKey="Moulin L" first="Lionel" last="Moulin">Lionel Moulin</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative Genomics of <italic>Aeschynomene</italic>
Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia</title>
<author><name sortKey="Mornico, Damien" sort="Mornico, Damien" uniqKey="Mornico D" first="Damien" last="Mornico">Damien Mornico</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="af2-genes-03-00035">LABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France; E-Mails:<email>vallenet@genoscope.cns.fr</email>
(D.V.);<email>asmith@genoscope.cns.fr</email>
(A.A.T.S.);<email>cmedigue@genoscope.cns.fr</email>
(C.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Miche, Lucie" sort="Miche, Lucie" uniqKey="Miche L" first="Lucie" last="Miché">Lucie Miché</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Bena, Gilles" sort="Bena, Gilles" uniqKey="Bena G" first="Gilles" last="Béna">Gilles Béna</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="af3-genes-03-00035">LMBM, Faculté des Sciences, Université Mohammed V-Agdal, Av. Ibn Batouta BP 1014, Rabat, Morocco</nlm:aff>
<country xml:lang="fr">Maroc</country>
<wicri:regionArea>LMBM, Faculté des Sciences, Université Mohammed V-Agdal, Av. Ibn Batouta BP 1014, Rabat</wicri:regionArea>
<placeName><settlement type="city">Rabat</settlement>
<region nuts="2">Rabat-Salé-Kénitra</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Nouwen, Nico" sort="Nouwen, Nico" uniqKey="Nouwen N" first="Nico" last="Nouwen">Nico Nouwen</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Vermeglio, Andre" sort="Vermeglio, Andre" uniqKey="Vermeglio A" first="André" last="Verméglio">André Verméglio</name>
<affiliation><nlm:aff id="af4-genes-03-00035">Laboratoire de Bioénergétique Cellulaire, CEA Cadarache, DSV, IBEB, 13108 Saint-Paul-lez-Durance, France; E-Mail:<email>andre.vermeglio@cea.fr</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Vallenet, David" sort="Vallenet, David" uniqKey="Vallenet D" first="David" last="Vallenet">David Vallenet</name>
<affiliation><nlm:aff id="af2-genes-03-00035">LABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France; E-Mails:<email>vallenet@genoscope.cns.fr</email>
(D.V.);<email>asmith@genoscope.cns.fr</email>
(A.A.T.S.);<email>cmedigue@genoscope.cns.fr</email>
(C.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Smith, Alexander A T" sort="Smith, Alexander A T" uniqKey="Smith A" first="Alexander A. T." last="Smith">Alexander A. T. Smith</name>
<affiliation><nlm:aff id="af2-genes-03-00035">LABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France; E-Mails:<email>vallenet@genoscope.cns.fr</email>
(D.V.);<email>asmith@genoscope.cns.fr</email>
(A.A.T.S.);<email>cmedigue@genoscope.cns.fr</email>
(C.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Giraud, Eric" sort="Giraud, Eric" uniqKey="Giraud E" first="Eric" last="Giraud">Eric Giraud</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Medigue, Claudine" sort="Medigue, Claudine" uniqKey="Medigue C" first="Claudine" last="Médigue">Claudine Médigue</name>
<affiliation><nlm:aff id="af2-genes-03-00035">LABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France; E-Mails:<email>vallenet@genoscope.cns.fr</email>
(D.V.);<email>asmith@genoscope.cns.fr</email>
(A.A.T.S.);<email>cmedigue@genoscope.cns.fr</email>
(C.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moulin, Lionel" sort="Moulin, Lionel" uniqKey="Moulin L" first="Lionel" last="Moulin">Lionel Moulin</name>
<affiliation><nlm:aff id="af1-genes-03-00035">IRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France; E-Mails:<email>dmornico@genoscope.cns.fr</email>
(D.M.);<email>lucie.miche@univ-provence.fr</email>
(L.M.);<email>gilles.bena@ird.fr</email>
(G.B.);<email>nico.nouwen@ird.fr</email>
(N.N.);<email>eric.giraud@ird.fr</email>
(E.G.)</nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Genes</title>
<idno type="eISSN">2073-4425</idno>
<imprint><date when="2011">2011</date>
</imprint>
</series>
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<front><div type="abstract" xml:lang="en"><p>Tropical aquatic species of the legume genus <italic>Aeschynomene</italic>
are stem- and root-nodulated by bradyrhizobia strains that exhibit atypical features such as photosynthetic capacities or the use of a <italic>nod</italic>
gene-dependent (ND) or a <italic>nod</italic>
gene-independent (NI) pathway to enter into symbiosis with legumes. In this study we used a comparative genomics approach on nine <italic>Aeschynomene</italic>
symbionts representative of their phylogenetic diversity. We produced draft genomes of bradyrhizobial strains representing different phenotypes: five NI photosynthetic strains (STM3809, ORS375, STM3847, STM4509 and STM4523) in addition to the previously sequenced ORS278 and BTAi1 genomes, one photosynthetic strain ORS285 hosting both ND and NI symbiotic systems, and one NI non-photosynthetic strain (STM3843). Comparative genomics allowed us to infer the core, pan and dispensable genomes of <italic>Aeschynomene</italic>
bradyrhizobia, and to detect specific genes and their location in Genomic Islands (GI). Specific gene sets linked to photosynthetic and NI/ND abilities were identified, and are currently being studied in functional analyses.</p>
</div>
</front>
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</TEI>
<affiliations><list><country><li>Maroc</li>
</country>
<region><li>Rabat-Salé-Kénitra</li>
</region>
<settlement><li>Rabat</li>
</settlement>
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<name sortKey="Miche, Lucie" sort="Miche, Lucie" uniqKey="Miche L" first="Lucie" last="Miché">Lucie Miché</name>
<name sortKey="Mornico, Damien" sort="Mornico, Damien" uniqKey="Mornico D" first="Damien" last="Mornico">Damien Mornico</name>
<name sortKey="Moulin, Lionel" sort="Moulin, Lionel" uniqKey="Moulin L" first="Lionel" last="Moulin">Lionel Moulin</name>
<name sortKey="Nouwen, Nico" sort="Nouwen, Nico" uniqKey="Nouwen N" first="Nico" last="Nouwen">Nico Nouwen</name>
<name sortKey="Smith, Alexander A T" sort="Smith, Alexander A T" uniqKey="Smith A" first="Alexander A. T." last="Smith">Alexander A. T. Smith</name>
<name sortKey="Vallenet, David" sort="Vallenet, David" uniqKey="Vallenet D" first="David" last="Vallenet">David Vallenet</name>
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</record>
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